All Classes
AbortableJobQueueInterface
AbortableJobQueueReadOnlyInterface
AbortablePluginInterface
About
AboutImpl
AbsoluteProgressReporter
AbstractBatcher
AbstractPlugin
AbstractReader
AbstractUpdateToSchemaVersion
AccessControlled
AccountExpiredException
Acquisition
AcquisitionData
AddExpression
Aggregations
AHit
AliasKeyManager
AlreadyLoggedInException
AndRestriction
Annotatable
AnnotatableData
AnnotatedData
AnnotatedItem
Annotation
AnnotationBetweenRestriction
AnnotationData
AnnotationInRestriction
Annotations
AnnotationSet
AnnotationSetData
AnnotationSimpleRestriction
AnnotationType
AnnotationTypeData
AnnotationTypeNameReader
AnnotationValueReader
Annotator
Application
ArrayIterator
AscOrder
AttributeDefinition
AttributeFilter
AttributeReader
AuthenticationException
AuthenticationInformation
Authenticator
AutoDetectingImporter
Base64Coder
Base64Util
BaseException
BasicBatcher
BasicData
BasicItem
BatchableData
BatchedPropertyInfo
Batcher
BetweenRestriction
BioMaterial
BioMaterialData
BioMaterialEvent
BioMaterialEventData
BioSource
BioSourceData
BooleanParameterType
BooleanParameterValueData
ChainedProgressReporter
ChannelFunction
ClassDescriptor
ClassLocal
ClassMetadataExposed
ClassUtil
Client
ClientData
ClientDefaultSettingData
ColumnPreferences
CommonData
CommonItem
Config
ConfigurationException
ConnectionClosedException
ConsoleProgressReporter
Controlled
Coordinate
CountExpression
CreationEvent
CreationEventData
CreationInterface
CvLookup
CvParam
DatabaseException
DataProcessingStep
DataProcessingStepData
DataQuery
DataResultIterator
DateParameterType
DateParameterValueData
DateReader
DateUtil
DbControl
DefaultAttributeFilter
DescOrder
DetachedItemException
Diff3
DigestParameter
DigestParameterData
Directory
DirectoryData
DiskConsumable
DiskConsumableData
DiskUsage
DiskUsageData
DivideExpression
DoubleParameterType
DoubleParameterValueData
DynamicResultIterator
EntityQuery
EntryDateReader
Enumeration
Enumeration.Entry
EnumReader
EqRestriction
EventCommentReader
EventTypeReader
Expression
Expressions
ExpressionSelect
ExtendableData
ExtendedProperties
ExtendedProperty
ExtendedPropertyAccessor
ExtensionDisableInterface
ExternalIdReader
Extract
ExtractData
Feature
FeatureData
File
File.Action
FileAttachable
FileAttachableData
FileAttributeFilter
FileCrudeWriter
FileCrudeWriterImpl
FileData
FileExtraUtil
FilenameParseUtil
FileNode
FileParameterType
FileParameterValueData
FileType
FileTypeData
FileTypeInterface
FileTypeNameReader
FileUtil
FileValidationInterface
FlatFileParser
FlatFileParser.Data
FlatFileParser.Line
FlatFileParser.LineType
FloatExpression
FloatParameterType
FloatParameterValueData
GelElectrophoresis
GelElectrophoresisData
GelImageAnalysisEvent
GelImageAnalysisEventData
GelScanEvent
GelScanEventData
GetHostName
GlobalDefaultSetting
GlobalDefaultSettingData
Group
GroupData
GroupGroups
GroupKeys
GroupPermissions
GroupProjects
GteqRestriction
GtRestriction
GuiContext
GuiContext.Type
GuiContextData
Hardware
HardwareConfiguration
HardwareConfigurationData
HardwareData
HardwareType
HardwareTypeData
HibernateUtil
Hit
HitData
HitInterface
HitsFilterForGelBasedProjects
HitsFilterForNonGelBasedProjects
Hql
HqlElementsExpression
HqlEntityExpression
HqlIndexExpression
HqlInnerJoin
HqlLeftJoin
HqlPropertyExpression
HqlQuery
HqlRightJoin
Identifiable
IdentifiableData
IdentificationFileInterface
IdentificationResultFileNameReader
IdReader
Include
InitDB
Input2File
InputSpectraData
InRestriction
Install
InstrumentConfiguration
InstrumentConfigurationData
IntegerExpression
IntegerParameterType
IntegerParameterValueData
IntegerUtil
InteractivePlugin
InvalidAnnotationException
InvalidDataException
InvalidPasswordException
InvalidPasswordException
InvalidPathException
InvalidUseOfNullException
IPG
IPGData
Item
ItemAlreadyExistsException
ItemFactory
ItemInUseException
ItemKey
ItemKeyData
ItemModifiedException
ItemNotFoundException
ItemParameterType
ItemParameterValueData
ItemQuery
ItemResultIterator
ItemResultList
JarClassLoader
Jep
JepExpressionFunction
JepFunction
Job
Job.ExecutionTime
Job.Status
Job.Type
JobData
JobQueueManager
JobQueueScheduler
JobStatusReader
Join
JoinType
Key
KeyData
KeyPermission
Label
LabelData
LabeledExtract
LabeledExtractData
LabelNameReader
LikeRestriction
LiquidChromatography
LiquidChromatographyData
Location
LockFile
Log2Function
LogExpression
LongExpression
LongParameterType
LongParameterValueData
LsidElement
LsidElement.SequenceRetriever
LteqRestriction
LtRestriction
MailUtil
ManageableJobQueueInterface
ManageableJobQueueReadOnlyInterface
MappingCoordinate
MascotFileReader
MascotParameterFileNameReader
MascotParameterFileSearchTypeReader
MascotParameterFileUtil
MascotParameterFileUtilInterface
MascotParameterSet
MascotParameterSetOptionsUtil
MascotParameterSetStorage
MascotParameterSetStorageData
MascotPropertiesFile2
MascotServerIO
MaxExpression
MD5
MeanExpression
MeanFunction
MeasuredArea
MeasuredAreaData
MeasuredBioMaterial
MeasuredBioMaterialData
Message
MessageData
Metadata
MethodException
MgfFileReader
MimeType
MimeTypeData
MinExpression
MinimalAttributeFilter
MinimalAttributeFilter2
Modification
ModificationData
MultiPermissions
MultiplyExpression
MWPICalc
MzDataExpAcqSpecificationBlock
MzDataExpAcquisitionBlock
MzDataExpActivationBlock
MzDataExpAdminBlock
MzDataExpAnalyzerBlock
MzDataExpAnalyzerListBlock
MzDataExpCommon
MzDataExpCommonAnnotation
MzDataExpCommonDc
MzDataExpCommonPeakList
MzDataExpCommonPeakListSet
MzDataExpContactBlock
MzDataExpDataBlock
MzDataExpDataProcessingBlock
MzDataExpDescriptionBlock
MzDataExpDetectorBlock
MzDataExpInstrumentBlock
MzDataExpInstrumentNameBlock
MzDataExpIntenArrayBinaryBlock
MzDataExpIonSelectionBlock
MzDataExpMzArrayBinaryBlock
MzDataExpMzDataBlock
MzDataExporter
MzDataExpPrecursorBlock
MzDataExpPrecursorListBlock
MzDataExpProcessingMethodBlock
MzDataExpSampleNameBlock
MzDataExpSoftwareBlock
MzDataExpSourceBlock
MzDataExpSourceFileBlock
MzDataExpSpectrumBlock
MzDataExpSpectrumDescBlock
MzDataExpSpectrumInstrumentBlock
MzDataExpSpectrumListBlock
MzDataExpSpectrumSettingsBlock
MzDataImpAcqSpecificationBlock
MzDataImpAcquisitionBlock
MzDataImpActivationBlock
MzDataImpAdminBlock
MzDataImpAnalyzerBlock
MzDataImpAnalyzerListBlock
MzDataImpCommon
MzDataImpCommonAnnotation
MzDataImpCommonDc
MzDataImpCommonPeakList
MzDataImpCommonPeakListSet
MzDataImpContactBlock
MzDataImpDataBlock
MzDataImpDataProcessingBlock
MzDataImpDescriptionBlock
MzDataImpDetectorBlock
MzDataImpInstrumentBlock
MzDataImpInstrumentNameBlock
MzDataImpInstrumentSourceBlock
MzDataImpIntenArrayBinaryBlock
MzDataImpIonSelectionBlock
MzDataImpMzArrayBinaryBlock
MzDataImpMzDataBlock
MzDataImporter
MzDataImportTest
MzDataImpPrecursorBlock
MzDataImpPrecursorListBlock
MzDataImpProcessingMethodBlock
MzDataImpSampleNameBlock
MzDataImpSoftwareBlock
MzDataImpSourceFileBlock
MzDataImpSpectrumBlock
MzDataImpSpectrumDescBlock
MzDataImpSpectrumInstrumentBlock
MzDataImpSpectrumListBlock
MzDataImpSpectrumSettingsBlock
MzMLFileReader
Nameable
NameableData
NameableUtil
NameReader
NegateExpression
NeqRestriction
News
NewsData
NotificationConfiguration
NotificationConfiguration.Mode
NotLoggedInException
NotRestriction
NumberOutOfRangeException
ObservedModification
ObservedModificationData
OMSSAParameterFileNameReader
OMSSAParameterFileUtil
OMSSAParameterFileUtilInterface
OMSSAParameterSet
OMSSAParameterSetOptionsUtil
OMSSAParameterSetStorage
OMSSAParameterSetStorageData
OMSSAPropertiesFile2
Operator
Order
Orders
OriginalQuantityReader
OrRestriction
Ownable
OwnableData
OwnableUtil
OwnedData
OwnedItem
ParameterException
ParameterExpression
ParameterType
ParameterValueData
ParameterValues
PasswordData
PasswordField
Path
Path.Type
Peak
PeakBatcher
PeakData
PeakList
PeakListBatcher
PeakListData
PeakListFileImpl
PeakListFileInterface
PeakListFileNameReader
PeakListFileValidationFactory
PeakListSet
PeakListSetData
Peptide
PeptideData
Permission
PermissionDeniedException
PickFileInterface
PiumsPepfilReader
PklFileReader
Plugin
Plugin.MainType
PluginConfiguration
PluginConfigurationData
PluginConfigurationRequest
PluginDefinition
PluginDefinitionData
PluginExecutionRequest
PluginParameter
PluginResponse
PluginType
PluginTypeData
PolyPeptide
PolyPeptideData
POP3Authenticator
Precursor
PrecursorData
PrecursorSelectedIon
PreferencesFile
ProgressReporter
Project
ProjectData
ProjectKey
ProjectKeyData
ProjectKeys
ProjectPermission
ProjectPermissions
PropertiesFileHandler
PropertyFilter
PropertyFilterData
Protein
ProteinData
Protocol
ProtocolData
ProtocolFileNameReader
ProtocolType
ProtocolTypeData
ProtocolTypeNameReader
Query
QueryElement
QueryFactory
QueryResult
QueryType
Quota
QuotaData
QuotaException
QuotaIndex
QuotaType
QuotaTypeData
RealTable
Removable
RemovableData
RemovableUtil
Replace
Request
RequestInformation
Response
Response.Status
Restriction
Restrictions
ResultIterator
ResultList
RobotFileImpl
RobotFileInterface
RobotFileSpotXY
Role
RoleData
RoleKey
RoleKeyData
RoleKeys
Sample
SampleData
SaveUserRolesMethod
SchemaFactory
SchemaVersion
SchemaVersionData
SearchDatabase
SearchDatabaseData
SearchModification
SearchModification.TerminalSpecificity
SearchModificationData
SearchResult
SearchResultData
Select
SelectedExpression
Selects
SeparationEvent
SeparationEventData
SeparationMethod
SeparationMethodData
Session
SessionControl
SessionData
Setting
SettingData
Shareable
ShareableData
ShareableUtil
ShareableUtil
SharedData
SharedItem
SimpleAbsoluteProgressReporter
SimpleAuthenticator
SimpleProgressReporter
Software
SoftwareConfiguration
SoftwareConfigurationData
SoftwareData
SoftwareType
SoftwareTypeData
SortOrder
SpectrumFileAnalyzer
SpectrumFileAnalyzerInterface
SpectrumFileContact
SpectrumFileContactInterface
SpectrumFileContactReaderInterface
SpectrumFileInstrument
SpectrumFileInstrumentInterface
SpectrumFileInstrumentReaderInterface
SpectrumIdReaderInterface
SpectrumImpl
SpectrumInterface
SpectrumPrecursor
SpectrumPrecursor.FragmentationType
SpectrumSearch
SpectrumSearchData
SqlQuery
SqlResult
SqlResultIterator
SqlResultList
SqrtExpression
StainingEvent
StainingEventData
StringPair
StringPairInterface
StringParameterType
StringParameterValueData
StringTooLongException
StringUtil
SubtractExpression
SumExpression
SystemData
SystemItem
SystemItems
TablePreferences
TablePreferencesConfiguration
TablePreferencesConfiguration.Mode
Tag
TagFactory
TandemFactory
TandemFileReader
TextParameterValueData
ToStringComparator
Transactional
Transactional.Action
Tree
Tree.Entry
Type
TypeUtil
TypeWrapper
UnknownLoginException
Update
UpdateEvent
UpdateEventData
UpdatesFactory
UpdateToSchemaVersion10
UpdateToSchemaVersion2
UpdateToSchemaVersion3
UpdateToSchemaVersion4
UpdateToSchemaVersion5
UpdateToSchemaVersion6
UpdateToSchemaVersion7
UpdateToSchemaVersion8
UpdateToSchemaVersion9
UpdateToSchemaVersionInterface
UpdateToSchemaVersionTmpl
UsedQuantity
User
UserClientSettingData
UserData
UserDefaultSettingData
UserGroups
UserKeys
UserParam
UserPermissions
UserProjects
UserRoles
Validatable
Values
Webclient
XMLCrudeWriter
XMLCrudeWriter2
XMLCrudeWriter2Impl
XMLCrudeWriter3
XMLCrudeWriter3Impl
XMLCrudeWriterImpl
XMLExportUtil
XMLImportUtil
XMLReaderUtil
XMLTag
XMLUtil
XMLValidator
XMLValidatorErrorHandler
XMLValidatorLazyErrorHandler
XsdToTagFactory
XTandemParameterFileNameReader
XTandemParameterFileUtil
XTandemParameterFileUtilInterface
XTandemParameterSet
XTandemParameterSetOptionsUtil
XTandemParameterSetStorage
XTandemParameterSetStorageData
XTandemPropertiesFile2
XYCoordinate